I'm running a hawk exhaust with the stock ecm and stock air filter. I asked Randy himself if he thought it could cause any damage to the engine and he said definitely not. I had originally asked him because I wanted to put the pipe on to ride 30 miles to a friends house where he was going to help me load a race map. We didn't end up getting it to work. I rode back out about a week later, then then he just let me borrow the cable to try at home and I still haven't managed to get it to load right. All of that started back around August and I've been riding with that exhaust on since. As long as you don't change out the air filter, there shouldn't be any way for more air to get into the engine for you to worry about what's coming out the other end.
If I'm revving up near the redline and let off the gas it'll pop pretty good, but not for normal riding. The only time that really happens is if I do a wheelie somewhere and ride it out until I'm almost at the redline, and then it'll pop until the engine slows me down enough or if I shift up a gear or two.