think you need to give the guys at EBR a call and discuss the issues you have at hand, think they'll probably ask if you have the CD with tuning software or ask you to ship the ECM to them and have it reset to base calibration map. either way something is off, not showing any codes doesn't seem right either, maybe I'm wrong, but it's worth getting any info from the people that created it. EBR's engineering dept. should have tons of data showing failures and successful loads, performance data of the ecm. they would make patches to correct failures and probably capable of doing target loads in the software where needed to correct faults to allow proper operation of the component.
think the guy you bought it from may have done some changing of settings, f@#!ed it up and had the same issues, couldn't figure it out and decided to sell the bike, just saying it's possible
good luck and don't give up