From my understanding, the ground tanks get less moisture do to the fact that they are more temperature stabilized. The condensation that does accumulate settles in the bottom of the tank and can't affect the pumped fuel due to a standoff from the bottom of the tank that prohibits sediment/water from getting to the inlet of the pumps. The tanks cant be left open without bypassing automatic closing valves that keep the vapors from escaping into the atmosphere, each transfer truck, has to hook up a product transfer hose and a vent to each tank. When he removes those hoses, the valves shut automatically.
All that being said, I had a '78 Monte Carlo that would not exceed 40mph on Circle-K gas, I would stop anywhere else, add $5 of gas, and it would run fine. Fuels are formulated for different areas, different additives, and can affect any engine. Use a High Volume station, if the Bike don't like it, Try another, if you don't have any other choices, then try the additives/octane boosters.
The color is added to the fuel to identify it during the post refining processes, including transfer. Their is a red dye added to Non Road use Diesel, that they can check for in over the road trucks, if they find the red dye in the tanks, it is a HUGE!!! fine to the Trucker.