Well long story short this is how the problem started.
Installed LED Blinkers, worked after I installed new flasher. Then same night the headlights went out while it was dark(which is how I noticed). Since then I've done an R to S tail swap but that hasn't changed anything. I went back to the old flasher and pulled the blinkers and have the same problem. Then One day last week after working on the problem I was on the highway headed to school and 5th gear and 3500 (bout 70ish MPH) the Engine light came on, I backed off to below 3000RPM and the engine light went off, revved up and it came on, then backed off again and didn't have the issue again. Trouble code stuff is earlier in the thread which lead me to replacing the VR but after I installed the new one I'm still having the same problem. As of now I'm just going ground by ground cleaning everything up and inspecting wiring as I go. I had the front end apart and have done the wiggle test on everything I can get my hands on with no results.
Eventually I'll figure it out lol
KC